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Michal Ziv-Ukelson, Irit Gat-Viks, Ydo Wexler, Ron Shamir. A Faster Algorithm for RNA Co-folding

Cheng Soon Ong, Alexander Zien. An Automated Combination of Kernels for Predicting Protein Subcellular Localization

Thomas Lingner, Peter Meinicke. Fast Target Set Reduction for Large-scale Protein Function Prediction: a Multi-class Multi-label Machine Learning Approach

Nico Pfeifer, Oliver Kohlbacher. Multiple Instance Learning Allows MHC Class II Epitope Predictions across Alleles

Alexander Medvedovsky, Vineet Bafna, Uri Zwick, Roded Sharan. An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks

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Xiuwei Zhang, Bernard Moret. Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach

Pasi Rastas, Jussi Kollin, Mikko Koivisto. Fast Bayesian Haplotype Inference via Context Tree Weighting

Qi Zhang, Wei Wang, Leonard Mcmillan, Fernando Pardo-Manuel de Villena, David Threadgill, Jan Prins. Genotype Sequence Segmentation: Handling Constraints and Noise

Stefan Grunewald, Andreas Spillner, Kristoffer Forslund, Vincent Moulton. Constructing Phylogenetic Supernetworks from Quartets

Daniel Huson, Regula Rupp. Summarizing Multiple Gene Trees Using Cluster Networks

Marcel Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron. Fast and Adaptive Variable Order Markov Chain Construction

Inke Herms, Sven Rahmann. Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata

Raheleh Salari, Alexander Schonhuth, Fereydoun Hormozdiari, Artem Cherkasov, S. Cenk Sahinalp. The Relation Between Indel Length and Functional Divergence: a Formal Study

Jose Augusto Amgarten Quitzau, Jens Stoye. Detecting Repeat Families in Incompletely Sequenced Genomes

Sagi Snir, Tamir Tuller. Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models

Hans-Joachim Boeckenhauer, Abu Zafer M Dayem Ullah, Leonidas Kapsokalivas, Kathleen Steinhofel. A Local Move Set for Protein Folding in Triangular Lattice Models

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