Accepted Papers (WABI)

  • Eric Tannier, Chunfang Zheng, David Sankoff. Multichromosomal Genome median and Halving Problems
  • Meng Zhang, William Arndt, Jijun Tang. A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem
  • Wei Xu, David Sankoff. Decompositions of Multiple Breakpoint Graphs and Rapid Exact Solutions to the Median Problem
  • Vladimir Yanovsky, Stephen Rumble, Michael Brudno. Read Mapping Algorithms for Single Molecule Sequencing Data
  • Vincent Lacroix, Michael Sammeth, Roderic Guigo, Anne Bergeron. Exact Transcriptome Reconstruction from Short Sequence Reads
  • Florian Battke, Carsten M\” uller-Tidow, Hubert Serve, Kay Nieselt. Post-Hybridization Quality Measures for Oligos in Genome-Wide Microarray Experiments
  • Glenn Hickey, Paz Carmi, Anil Maheshwari, Norbert Zeh. NAPX: A Polynomial Time Approximation Approximation Scheme for the Noah's Ark Problem
  • Peter Damaschke. Minimum Common String Partition Parameterized
  • Zoran Nikoloski, Sergio Grimbs, Joachim Selbig, Oliver Ebenhöh. Hardness and Approximability of the Inverse Scope Problem
  • Martin Simonsen, Christian N.S. Pedersen, Thomas Mailund. Rapid Neighbour-Joining
  • Seung-Jin Sul, Grant Brammer, Tiffani Williams. Efficiently Computing Arbitrarily-Sized Robinson-Foulds Distance Matrices
  • Arthur Choi, Noah Zaitlen, Buhm Han, Knot Pipatsrisawat, Adnan Darwiche, Eleazar Eskin. Efficient Genome Wide Tagging by Reduction to SAT
  • Serdar Bozdag, Stefano Lonardi, Timothy Close. Computing the Minimal Tiling Path from a Physical Map by Integer Linear Programming
  • Rumen Andonov, Nicola Yanev, Noel Malod-Dognin. An Efficient Lagrangian Relaxation for the Contact Map Overlap Problem
  • Michal Ziv-Ukelson, Irit Gat-Viks, Ydo Wexler, Ron Shamir. A Faster Algorithm for RNA Co-folding
  • Cheng Soon Ong, Alexander Zien. An Automated Combination of Kernels for Predicting Protein Subcellular Localization
  • Thomas Lingner, Peter Meinicke. Fast Target Set Reduction for Large-scale Protein Function Prediction: a Multi-class Multi-label Machine Learning Approach
  • Nico Pfeifer, Oliver Kohlbacher. Multiple Instance Learning Allows MHC Class II Epitope Predictions across Alleles
  • Alexander Medvedovsky, Vineet Bafna, Uri Zwick, Roded Sharan. An Algorithm for Orienting Graphs Based on Cause-Effect Pairs and Its Applications to Orienting Protein Networks
  • Ludovic Cottret, Paulo Vieira Milreu, Vicente Acu\~na, Alberto Marchetti-Spaccamela, F\'abio Viduani Martinez, Marie-France Sagot, Leen Stougie. Enumerating Precursor Sets of Target Metabolites in a Metabolic Network
  • Xiuwei Zhang, Bernard Moret. Boosting the Performance of Inference Algorithms for Transcriptional Regulatory Networks Using a Phylogenetic Approach
  • Pasi Rastas, Jussi Kollin, Mikko Koivisto. Fast Bayesian Haplotype Inference via Context Tree Weighting
  • Qi Zhang, Wei Wang, Leonard Mcmillan, Fernando Pardo-Manuel de Villena, David Threadgill, Jan Prins. Genotype Sequence Segmentation: Handling Constraints and Noise
  • Stefan Grunewald, Andreas Spillner, Kristoffer Forslund, Vincent Moulton. Constructing Phylogenetic Supernetworks from Quartets
  • Daniel Huson, Regula Rupp. Summarizing Multiple Gene Trees Using Cluster Networks
  • Marcel Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron. Fast and Adaptive Variable Order Markov Chain Construction
  • Inke Herms, Sven Rahmann. Computing Alignment Seed Sensitivity with Probabilistic Arithmetic Automata
  • Raheleh Salari, Alexander Schonhuth, Fereydoun Hormozdiari, Artem Cherkasov, S. Cenk Sahinalp. The Relation Between Indel Length and Functional Divergence: a Formal Study
  • Jose Augusto Amgarten Quitzau, Jens Stoye. Detecting Repeat Families in Incompletely Sequenced Genomes
  • Sagi Snir, Tamir Tuller. Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models
  • Hans-Joachim Boeckenhauer, Abu Zafer M Dayem Ullah, Leonidas Kapsokalivas, Kathleen Steinhofel. A Local Move Set for Protein Folding in Triangular Lattice Models
  • Martin Paluszewski, Pawel Winter. Protein Decoy Generation using Branch and Bound with Efficient Bounding
accepted.wabi.txt · Last modified: 2008/07/11 09:43 by delling
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